Program
Thursday January 17, 2008 |
|
8:00AM-8:45AM |
BREAKFAST and Registration (pick-up badges) |
8:45AM-9:00AM |
OPENING REMARKS |
9:00AM-10:00AM |
SESSION 1: Keynote Talk |
10:15AM-11:40AM |
SESSION 2: Bioimage Analysis I |
45min |
Invited talk |
20 min |
Computer-assisted Histopathology: Experience with Neuroblastoma and Follicular Lymphoma |
20 min |
Turning Images into Knowledge: Cognition Network Technology for the Analysis of Life Sciences Image Data |
11:45-12:45PM |
SESSION 3: POSTERS |
12:45PM-1:45PM |
LUNCH |
1:45PM-3:30PM |
SESSION 4: Bioimage Atlases |
45 min |
Invited talk |
20 min |
Computational Neuroanatomy from Genome Scale Gene Expression Data in the C57Bl/6J Mouse Brain |
20 min |
Berkeley Drosophila Transcription Network Project: Morphology and Gene Expression Atlas |
20 min |
Morphomic Analysis of a Simple Chordate |
330-430 |
SESSION 5: POSTERS |
|
|
4:30PM-6:00PM |
SESSION 6: Bioimage Infrastructure |
30 min |
Invited talk |
20 min |
Bisque: Bio-Image Semantic Query User Environment |
20 min |
Selective Scanning for faster Prostate Pathology |
20 min |
Automated quantitative analysis of phenotype similarities |
6:15PM-8PM |
RECEPTION AND DINNER |
Friday, January 18, 2008 |
|
8-9AM |
BREAKFAST |
9-10AM |
SESSION 7: Keynote |
10AM-11:20AM |
SESSION 8: BioImage Analysis 2 |
30 min |
Invited talk |
30 min |
Invited talk |
20 min |
Analysis of Intravital Microscopic Images of Rolling Leukocytes |
11:20-11:40AM |
Break |
11:40AM-12:50PM |
SESSION 9: BioImage Data Analysis |
30 min |
Invited talk |
20 min |
Automatic Segmentation of Microtubule Plus End Motion into Phases of Growth and Shortening. |
20 min |
Multivariate characterization of membrane proteins |
12:50PM-2:00PM |
POSTERS & LUNCH |
2:00PM-2:50PM |
SESSION 10: Bioimage-based systems biology |
30 min |
Invited Talk |
20 min |
GoFigure and The Digital Fish Project: Open tools and open data for an imaging based approach to systems biology |
2:50PM-3:15PM |
BREAK |
3:15PM-4:45PM |
SESSION 11 - PANEL: Benchmarking and validation of computer vision methods for bioimages The panel discussion was prompted by calls from the last meeting for the establishment of benchmarks and test data sets for validation and testing of image processing and analysis algorithms. Panelists will provide brief perspectives on these topics for different types of data, followed by open discussion of possible actions. |
4:45PM |
CLOSING REMARKS |
Posters
Posters need to be 4 ft (Width) x 3 ft (Height), landscape orientation. Push tacks or adhesive will be provided at the conference to mount your poster to the board.
- Understanding of conjugated polyelectrolytes – DNA interactions based on sequential analysis of AFM imaging, Boguslaw Obara and Arkadiusz Chworos.
- IICBU 2008 – A Benchmark Suite for Biological Imaging, L.Shamir, T. Macura, N. Orlov, D. M. Eckley, I. G. Goldberg.
- Quantitative pattern analysis of a large tissue collection across multiple experimental variables, T. Macura, J. Johnston, J. Cordero, N. Orlov, L. Shamir, I. G. Goldberg
- Multimodal Imaging of Embryogenesis, Rusty Lansford.
- 3D Tracking of cell lineages from 4-D fluorescence imagery of stem-cell niche, Venugopal Reddy, A. Roy-Chowdhury.
- Benchmark for evaluating biological image analysis tools, Elisa Drelie Gelasca, Jiyun Byun, Boguslaw Obara, B.S. Manjunath.
- Automated 5-D Analysis of Cell Migration and Interaction from Multi-spectral Multi-dimensional Image Series, Ying Chen, Ena Ladi, Paul Herzmark, Ellen Robey, and Badrinath Roysam.
- Automatic Contour Extraction Of Neurons In Presence Of Overlap, Jorge de Jesus Gomes Leandro, Roberto Marcondes César Jr and Luciano da Fontoura Costa.
- Automated analysis of mitotic cell nuclei in 3D fluorescence microscopy image sequences, Nathalie Harder, Felipe Mora-Bermudez, William J. Godinez, Jan Ellenberg, Roland Eils, Karl Rohr.
- Automatic nuclei detection and dataflow in Bisquik system, Boguslaw Obara, Jiyun Byun, Dmitry Fedorov, B. S. Manjunath.
- A Live Cell Imaging Assay for siRNA Enhancers and Suppressors of Inhibitors of Mitotic Kinesin-5, Melody Tsui, Tiao Xie, James D. Orth, Anne Carpenter, Thouis Ray Jones,Caroline E. Shamu, Timothy J. Mitchison.
- Image analysis for probing cell kinetic order during embryo morphogenesis, Willy Supatto and Scott E. Fraser.
- Segmentation and analysis of notochord cells in 3D microscope data, Boguslaw Obara, Michael Veeman, William Smith, B.S. Manjunath.
- Spatiotemporal Dynamics of the Growth of Pollen Tubes Using GFP-tagged RIC4 Videos, Albert Cruz, Bir Bhanu and Zhenbiao Yang
- Quantifying Cell Viability in Cultured Cells, Jiyun Byun, DeeAnn Hartung, Stuart Feinstein and B. S. Manjunath.
- 3D Retrieval and Classification for Structural Bioinformatics with implications to Biological Image Databases, Afzal Godil and Talapady N. Bhat.
- On Using Cytoplasm and Stroma Features in Automated Cancer Diagnosis, Laura E. Boucheron, Neal R. Harvey, and B. S. Manjunath.
- Analysis of optical images of cortex using parallel support vector machines, A.R. Rao, G.A. Cecchi, Y. Xiao, E. Kaplan.
- A Topological Approach to Cell Counting, Peter Saveliev, Ash Pahwa.
- Sample Scoring through Immunohistochemistry, Hang Chang, Rosa Anna DeFilippis, Bahram Parvin.
- Collections of classifiers tuned for cell finding with an application to building digital cell atlases of Drosophila embryos., William Beaver, Adam Pare, David Kosman, Ethan Bier, William McGinnis, Yoav Freund.
- Digital Processing of Light Microscopy Images in Plant Pathogen Diagnostics, Jiri Sedlar, Michaela Sedlarova, Jan Flusser.
- Molecules in the Mist - Informatics Challenges in Cryo-Electron Tomography, Christoph Best.
- Automated Live Cell Imaging of Green Fluorescent Protein Degradation in Individual Fibroblasts, Michael Halter, Alex Tona, Kiran Bhadriraju, Anne L. Plant, John T. Elliott.
- Mining for Patterns on Theme Maps of Phenotyped Cells, Sayan Ranu, Ambuj K. Singh.
- The Automated Recognition of Protein Crystal Images by Feed-forward Neural Network, Ming Jack Po, George DeTitta, Andrew Laine.
- Probabilistic Analysis of Retinal Neuron Morphology, Nicholas Larusso, Brian Ruttenberg, Ambuj Singh.
- Robust and Scalable Scoring of Crystallization Trials, Roy Liu, Yoav Freund.
- Constructing Data-Driven Fate-maps for Drosophila Melanogaster Imaginal discs via High-throughput Imaging Methods, Parvez Ahammad, Cyrus L. Harmon, Ann Hammonds, Susan E. Celniker, S. Shankar Sastry, and Gerald M. Rubin.
- A quantitative analysis of cell motility, Jake M. Hofman, Chris H. Wiggins.
- Neighborhood Filtering in cryoEM, Alexandre Cunha, Grant Jensen.
- Image Cytometry Reveals Mechanisms of Shape Determination in Motile Cells, Zachary Pincus, Kinneret Keren, Greg M. Allen, Erin L. Barnhart, Alex Mogilner, Julie A. Theriot.
